Medical Abbreviation Disambiguation
Medical NLP system using TinyBERT, BioBERT, and SciBERT to disambiguate clinical abbreviations (F1 up to 0.89).
Duration
2023 - 2024
Client
Personal / Research
Tech stack
NLPMedical AIBERT
- Developed a medical abbreviation disambiguation system using negative sampling.
- Fine-tuned TinyBERT, BioBERT, and SciBERT, achieving an F1 score of 0.81 with SciBERT.
- Processed a 5M-record MeDAL dataset; error analysis boosted F1 from 77% to 89% for key abbreviations.